Difference between revisions of "Razers3"

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(Created page with "Category:SoftwareCategory:Biology]]Category:Phylogenetics]] {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|razers3}} |{{#vardefine:url|http://packages.seqan.de/razers3...")
 
 
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[[Category:Software]]Category:Biology]]Category:Phylogenetics]]
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[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|razers3}}
 
|{{#vardefine:app|razers3}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory
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* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory
* HPC_{{#uppercase:{{#var:app}}}}_EXE - example directory
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* HPC_{{uc:{{#var:app}}}}_EXE - example directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 16:50, 10 June 2022

Description

razers3 website  

RazerS 3 is a tool for mapping millions of short genomic reads onto a reference genome. It was designed with focus on mapping next-generation sequencing reads onto whole DNA genomes. RazerS 3 searches for matches of reads with a percent identity above a given threshold (-i X), whereby it detects alignments with mismatches as well as gaps.

Environment Modules

Run module spider razers3 to find out what environment modules are available for this application.

System Variables

  • HPC_RAZERS3_DIR - installation directory
  • HPC_RAZERS3_BIN - executable directory
  • HPC_RAZERS3_DOC - documentation directory
  • HPC_RAZERS3_EXE - example directory