Difference between revisions of "DNA Clust"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|dnaclust}}
 
|{{#vardefine:app|dnaclust}}
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A tool for clustering large number of short similar DNA sequences. This program is originally designed for clustering targeted 16S rRNA pyrosequencing reads.
 
A tool for clustering large number of short similar DNA sequences. This program is originally designed for clustering targeted 16S rRNA pyrosequencing reads.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 18:50, 12 August 2022

Description

dnaclust website  

A tool for clustering large number of short similar DNA sequences. This program is originally designed for clustering targeted 16S rRNA pyrosequencing reads.

Environment Modules

Run module spider dnaclust to find out what environment modules are available for this application.

System Variables

  • HPC_DNACLUST_DIR - installation directory