ABySS

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Description

abyss website  

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

Required Modules

modules documentation

Serial

  • abyss

Parallel (MPI)

  • intel/2016.0.109
  • openmpi/1.10.2
  • abyss/1.9.0

System Variables

  • HPC_{{#uppercase:abyss}}_DIR - installation directory