ABySS
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Description
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ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.
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Available versions
- 1.3.1 - single threaded
Running the application using modules
To use abyss with the environment modules system at HPC the following commands are available:
Get module information for abyss:
$module spider abyss
Load the default application module:
$module load abyss
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_ABYSS_DIR - directory where abyss is located.
- HPC_ABYSS_BIN - executable directory
- HPC_ABYSS_DOC - documents directory
- HPC_ABYSS_MAN - manpages directory