Difference between revisions of "AMPtk"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 16:47, 10 June 2022
Description
AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also be used to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial 16S, and insect COI amplicons.
Environment Modules
Run module spider amptk to find out what environment modules are available for this application.
System Variables
- HPC_AMPTK_DIR - installation directory
- HPC_AMPTK_BIN - binary directory
- HPC_AMPTK_DOC - documentation directory