AMPtk

From UFRC
Revision as of 14:11, 20 January 2017 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|amptk}} |{{#vardefine:url|https://githu...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

amptk website  

AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also be used to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial 16S, and insect COI amplicons.

Required Modules

Serial

  • gcc/5.2.0
  • amptk

System Variables

  • HPC_{{#uppercase:amptk}}_DIR - installation directory
  • HPC_{{#uppercase:amptk}}_DOC - documentation directory