Difference between revisions of "IAssembler"

From UFRC
Jump to navigation Jump to search
Line 1: Line 1:
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
+
[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|iassembler}}
 
|{{#vardefine:app|iassembler}}

Revision as of 19:05, 12 August 2022

Description

iassembler website  
iAssembler is a standalone package to assemble ESTs generated using Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers by employing an iterative assembly strategy and automated error corrections of mis-assemblies.

Environment Modules

Run module spider iassembler to find out what environment modules are available for this application.

System Variables

  • HPC_IASSEMBLER_DIR - installation directory




Citation

If you publish research that uses iassembler you have to cite it as follows:

Zheng Y, Zhao L, Gao J, Fei Z. (2011) iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. BMC Bioinformatics 12:453