LEfSe
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Description
LDA Effect Size (LEfSe) (Segata et. al 2010) is an algorithm for high-dimensional biomarker discovery and explanation that identifies genomic features (genes, pathways, or taxa) characterizing the differences between two or more biological conditions.
Environment Modules
Run module spider lefse to find out what environment modules are available for this application.
System Variables
- HPC_LEFSE_DIR - installation directory
- HPC_LEFSE_BIN - executable directory