Difference between revisions of "PeakSplitter"

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m (Text replace - "<!--Choose sections to enable - OPTIONAL--> |{{#vardefine:mod|1}} <!--Present instructions for running the software with modules -->" to "")
 
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__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
__NOEDITSECTION__
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
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[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]
 
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{|<!--Main settings - REQUIRED-->
{|
 
<!--Main settings - REQUIRED-->
 
 
|{{#vardefine:app|peaksplitter}}
 
|{{#vardefine:app|peaksplitter}}
 
|{{#vardefine:url|http://www.ebi.ac.uk/bertone/software.html}}
 
|{{#vardefine:url|http://www.ebi.ac.uk/bertone/software.html}}
<!--Compiler and MPI settings - OPTIONAL -->
 
|{{#vardefine:intel|}} <!-- E.g. "11.1" -->
 
|{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->
 
 
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
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Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.
 
Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.
 
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<!--Modules-->
==Available Versions==
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==Environment Modules==
* 1.0
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
==Required Modules==
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==System Variables==
[[Modules|modules documentation]]
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
===Serial===
 
*{{#var:app}}
 
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
|}}
 
|}}

Latest revision as of 20:19, 12 August 2022

Description

peaksplitter website  

Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.

Environment Modules

Run module spider peaksplitter to find out what environment modules are available for this application.

System Variables

  • HPC_PEAKSPLITTER_DIR - installation directory