Difference between revisions of "RnaQUAST"

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[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]
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[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-Seq]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|rnaquast}}
 
|{{#vardefine:app|rnaquast}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:57, 21 August 2022

Description

rnaquast website  

rnaQUAST is a tool for evaluating quality of transcriptome assemblies using reference genome and gene database.


Environment Modules

Run module spider rnaquast to find out what environment modules are available for this application.

System Variables

  • HPC_RNAQUAST_DIR - installation directory




Citation

If you publish research that uses rnaquast you have to cite it as follows:

http://spades.bioinf.spbau.ru/rnaquast/release1.2.0/manual.html#sec5