Scoary
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Description
Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.
Required Modules
Serial
- gcc/5.2.0
- scoary
System Variables
- HPC_{{#uppercase:scoary}}_DIR - installation directory
Citation
If you publish research that uses scoary you have to cite it as follows: