Hificnv
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Description
HiFiCNV is a copy number variant (CNV) caller optimized for HiFi reads. Key features include:
- Segmentation and calling optimized for HiFi germline WGS
- Automatic GC-bias estimation and correction
- Generates bigwig tracks for depth and allele frequency to visualize CNV-scale events in IGV
- CNV output in bedgraph and VCF formats
- Efficient multi-threaded analysis
Environment Modules
Run module spider hificnv to find out what environment modules are available for this application.
System Variables
- HPC_HIFICNV_DIR - installation directory
- HPC_HIFICNV_BIN - executable directory