Nextclade
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Description
Nextclade is an open-source project for viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement.
Environment Modules
Run module spider nextclade to find out what environment modules are available for this application.
System Variables
- HPC_NEXTCLADE_DIR - installation directory
Citation
If you publish research that uses nextclade you have to cite it as follows:
Hadfield et al., Nextstrain: real-time tracking of pathogen evolution , Bioinformatics (2018)