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- 3PCLR
- 3d-dna
- 4p
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- ABySS
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- ACTC
- ADFRsuite
- ADMB
- ADMIXTURE
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- AI Education and Training
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- AI reference dataset hosting policy
- ALFA
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- ATRAM
- AWSCLI
- Account and QOS limits under SLURM
- AdapterRemoval
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- AfterQC
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- AmPEPpy
- Amber Job Sample Scripts
- Ambertools
- Amphora2
- Ampligraph
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- Bam-Readcount
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- Basic Linux Use
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- CuOpt
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- CutRunTools
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- DOT
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- Dadi
- Daemons
- Dammit
- Dancemapper
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- Database Hosting
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- Dcmstack
- DeFusion
- DeNoGAP
- DeSALT
- DeTiN
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- DeepARG
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- Deepbgc
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- Delineate
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- Detectron2
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- DiCal2
- Diamond
- DiffReps
- Disbatch
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- Dlib
- DoGFinder
- Dock
- Dorado
- DosageConvertor
- Doxygen
- Dragmap
- Dragonflye
- Dram
- Dretools
- Dropseq
- Dsistudio
- Dtiprep
- Duchamp
- DynamicDBG
- Dynare
- Dynasor
- EAGLE
- ECE
- EDTA
- EDirect
- EEGLAB
- EGSnrc
- EGene-MVN
- EIGENSOFT
- ELPA
- EMAN2
- EMBOSS
- EMC